PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527427.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 382aa MW: 41787.7 Da PI: 5.1674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.7e-09	204	251	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq XP_010527427.1 204 SHSLAERARREKISERMKFLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 251 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.07E-11	198	255	No hit	No description
SuperFamily	SSF47459	6.94E-17	198	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	200	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.605	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	204	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-9	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MIMDKETEQT LNILPLDQSD PFGNGNDPMI GDFIGRFCDT REISPLALQS FSMNSQISAN 60 FPISGGIQFP YPGNFGSDRA YAVLRSQSTA QESNTSSLLD PDSGSASGRA QATVSNSRKR 120 KYVPTANGKE SPASSSLTAS NSKISEENAA SVAAKRSKQE EAVSGKDESE KKDNKDGNKD 180 NAKPPEPVKD YIHVRARRGQ ATDSHSLAER ARREKISERM KFLQDLVPGC NRITGKAVML 240 DEIINYVQSL QRQVEFLSMK LATLNPGMEF NANALLSAEM FQPGEPLLPQ SLYPLVCAEP 300 RLPSGYLSLG KRSIPRFSEM QFSSHASSIS SLPSSDGFVQ SEAPEFWEND LQSIVGMGFV 360 DNQQQHSIMS CSEPAVQMKI EP

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MIMDKETEQT LNILPLDQSD PFGNGNDPMI GDFIGRFCDT REISPLALQS FSMNSQISAN  60
FPISGGIQFP YPGNFGSDRA YAVLRSQSTA QESNTSSLLD PDSGSASGRA QATVSNSRKR  120
KYVPTANGKE SPASSSLTAS NSKISEENAA SVAAKRSKQE EAVSGKDESE KKDNKDGNKD  180
NAKPPEPVKD YIHVRARRGQ ATDSHSLAER ARREKISERM KFLQDLVPGC NRITGKAVML  240
DEIINYVQSL QRQVEFLSMK LATLNPGMEF NANALLSAEM FQPGEPLLPQ SLYPLVCAEP  300
RLPSGYLSLG KRSIPRFSEM QFSSHASSIS SLPSSDGFVQ SEAPEFWEND LQSIVGMGFV  360
DNQQQHSIMS CSEPAVQMKI EP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527427.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527427.1	0.0	PREDICTED: transcription factor bHLH77-like
Swissprot	Q9LK48	0.0	BH077_ARATH; Transcription factor bHLH77
TrEMBL	R0HM89	0.0	R0HM89_9BRAS; Uncharacterized protein
STRING	XP_010527427.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-164	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]