PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010526583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 200aa MW: 21905.7 Da PI: 7.1329 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.8e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H XP_010526583.1 4 LCDACESAGAILFCAADEAALCRSCDEKVH 33 6**************************998 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 53 | 94 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40 ++ C+ +e+ ++ ++Ce +++ lC +C + H g H +v XP_010526583.1 53 APSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHGRV 94 578*****************************7667788776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.281 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.29E-5 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.1E-5 | 4 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.186 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.9E-13 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 53 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.81E-8 | 54 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRILCDACES AGAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SHAPSCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRVLLLRQR VEFPGDKSGR VTEPGLQHKE 120 QNRARENSPN QNKSPACRQE PTADAQPGRK VENKLIDLNA KPQRIHEPAS YNQEQGIDVN 180 NNLENANAVH VGPFRGGPEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010526583.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526583.1 | 1e-146 | PREDICTED: B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 2e-85 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1R3HYV4 | 4e-92 | A0A1R3HYV4_9ROSI; Zinc finger, B-box | ||||
STRING | XP_010526583.1 | 1e-146 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-87 | DBB family protein |