PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526459.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 380aa MW: 41053.7 Da PI: 7.8866

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	241	276	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010526459.1 241 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 276 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.747	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-10	236	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.17E-5	236	280	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-7	241	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MNRAGLLESS PVQQLVAAGN PSWWSMSGGI RPPPPLMGHQ PPQISPNSFL RPPPPALPSL 60 LPQFLPSPTS SSSSSSPSVH NHYTNISSWP DYYDLPPESW SLSQLLLGGL MNGEEERLEV 120 SNHQIFKGKG LENWEEQILS HQASKLADMT NNNSNSNNGY VMSPNSKSCV TTNTATSISS 180 SSNNSVLDFS SINKSDGRNP VHRDRSLECH SSETGGSANK KPRLQASSPS TQTTLKVRKE 240 KLGGRIAALH QLVSPFGKTD TASVLSEAIG YIRFLQSQIE ALSLPYFGTA SGNMKHQQPV 300 QGDMNCIFPE DPGQQLVNEH CMKRRGASSS SDNQNPNSNE GPKKDLRSRG LCLVPISCTV 360 QVGGDNGADY WAQAIGASFR

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MNRAGLLESS PVQQLVAAGN PSWWSMSGGI RPPPPLMGHQ PPQISPNSFL RPPPPALPSL  60
LPQFLPSPTS SSSSSSPSVH NHYTNISSWP DYYDLPPESW SLSQLLLGGL MNGEEERLEV  120
SNHQIFKGKG LENWEEQILS HQASKLADMT NNNSNSNNGY VMSPNSKSCV TTNTATSISS  180
SSNNSVLDFS SINKSDGRNP VHRDRSLECH SSETGGSANK KPRLQASSPS TQTTLKVRKE  240
KLGGRIAALH QLVSPFGKTD TASVLSEAIG YIRFLQSQIE ALSLPYFGTA SGNMKHQQPV  300
QGDMNCIFPE DPGQQLVNEH CMKRRGASSS SDNQNPNSNE GPKKDLRSRG LCLVPISCTV  360
QVGGDNGADY WAQAIGASFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526459.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526459.1	0.0	PREDICTED: transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	1e-141	BH068_ARATH; Transcription factor bHLH68
TrEMBL	M4D3M9	1e-147	M4D3M9_BRARP; Uncharacterized protein
STRING	XP_010526459.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	5e-99	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]