PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARR-B | ||||||||
Protein Properties | Length: 664aa MW: 72673 Da PI: 6.4311 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.2 | 8.6e-29 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_010525933.1 202 KPRVVWTVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 80.9 | 4.2e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+ + +++l+++l + +y +v+++ ++++al+ll++++ +Dl++ D++mp+mdG++ll++ e +lp+i++++h++++++ + + G XP_010525933.1 19 VLAVDDDLTCLRILETLLHHCQY-HVTTTNQAQAALDLLRDNKnkFDLVISDVDMPDMDGFKLLEHVGLEM-DLPVIMLSGHSDPKYVMKGITHG 111 799********************.***************777777**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_010525933.1 112 ACDYLLKPVRIEELKN 127 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.4E-174 | 1 | 664 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 8.11E-36 | 16 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-42 | 16 | 168 | No hit | No description |
SMART | SM00448 | 2.0E-32 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.106 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.2E-24 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.43E-27 | 20 | 132 | No hit | No description |
PROSITE profile | PS51294 | 12.401 | 199 | 258 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-31 | 199 | 260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-20 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-7 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MTVEQDFETW DQFPVGMRVL AVDDDLTCLR ILETLLHHCQ YHVTTTNQAQ AALDLLRDNK 60 NKFDLVISDV DMPDMDGFKL LEHVGLEMDL PVIMLSGHSD PKYVMKGITH GACDYLLKPV 120 RIEELKNIWQ HVVRRRKFDK KNHGNNADGR DGSGNGSGNE CAGNSDQSNV KMSRKRKDQY 180 EDDEDDRDEN GHENEDPTAQ KKPRVVWTVE LHRKFVAAVN QLGIDKAVPK KILDLMNVEK 240 LTRENVASHL QKYRLYLKRI SCVANQQANM AAVLGSTDPH FLQMSSLNGL GGFHRTMAAG 300 SGQFQGGAAM RPFPPNGILG RFNSPAGLGV RNLSSSGMFL QTPTDMGKFQ QVSSLPVSPS 360 NGGNILQGLP MSLELDHLQT NNSSNNNNNN NNNNNNNNNN NNNNNNNNSN INNKGMSGNL 420 GAFPIFPTQG PLISGNPNNL LVLEGHPQQQ PPPTGTSLNS GFSPHISGDQ INRRLEHWPS 480 AVSSILPSAN IDKNCVSTVP MPSQNGNNAN QFDVSPLSSS GHPVHLQHSK ANTQGWNTQN 540 NGSLNYLIPF CHSSASLSQS SEPNSIGLCR NTDFDSSIQA DLFDPSLHMK QPDILGPTTD 600 ALLCNNTKEG FLMGQQKFQS GFMAANAGCL DDIVNSTMKQ EQNQADLTGG DLGFGGFSPL 660 RTCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-28 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525933.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525933.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X2 | ||||
Refseq | XP_019056954.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X1 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | D7LK57 | 0.0 | D7LK57_ARALL; Two-component response regulator | ||||
STRING | XP_010525933.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |