PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010524724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 166aa MW: 17668 Da PI: 10.5145 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.5e-19 | 51 | 85 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ XP_010524724.1 51 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 85 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.8E-14 | 45 | 96 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.466 | 45 | 81 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-12 | 46 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 49 | 85 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.29E-12 | 50 | 85 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 51 | 76 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-16 | 51 | 85 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MLDPSEKVLD SEAMKRKCSA LDSNEESKSS SSSSSNGSVI NETRSEAKKT CADCGTSKTP 60 LWRGGPAGPK SLCNACGIRS RKKRRAVIAA AAGGGGSADK KLRKGGSGGN QNRNPKIGDS 120 LKQRLMELGR DVMMQRSTVE RQRRKLGEEE QAAVLLMALS YGSVYA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010524724.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524724.1 | 1e-116 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 3e-64 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A1J3DI50 | 3e-58 | A0A1J3DI50_NOCCA; GATA transcription factor 15 | ||||
TrEMBL | A0A1J3ELK9 | 3e-58 | A0A1J3ELK9_NOCCA; GATA transcription factor 15 | ||||
TrEMBL | R0HPE7 | 3e-58 | R0HPE7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010524724.1 | 1e-115 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-54 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|