PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524329.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32066.5 Da    PI: 6.683
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18100152456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_010524329.1 100 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWK 152
                     4568889*********************************************9 PP
2HD-ZIP_I/II128.72.3e-4198189192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaLk++++ lk++n++L++++++L++el 
  XP_010524329.1  98 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYEALKQQFEVLKADNDALHAQNKKLNAELV 189
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.5E-1897158IPR001356Homeobox domain
PROSITE profilePS5007116.64998154IPR001356Homeobox domain
SuperFamilySSF466892.99E-1998156IPR009057Homeodomain-like
CDDcd000861.89E-1599155No hitNo description
PfamPF000461.1E-15100152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-19102162IPR009057Homeodomain-like
PRINTSPR000317.9E-6125134IPR000047Helix-turn-helix motif
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PRINTSPR000317.9E-6134150IPR000047Helix-turn-helix motif
PfamPF021833.3E-13154195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYDQSSSIEA GLRLNMGFPP HGFMFQQLHE DNGRHLTSPP SLPSCPPQLF HGGGGGNYMM  60
NRSMSFSSGG DQTQKSTTNG QEEAEEDLSD DGSQLLGEKK KRLNLEQVRA LEKSFELGNK  120
LEPERKMQLA KALGLQPRQV AIWFQNRRAR WKTKQLEKDY EALKQQFEVL KADNDALHAQ  180
NKKLNAELVV LKKKERNEGS RRGGGGGEAS WSNNGSTENN SSDINLEMSR TQAVNIIKDL  240
FPSSATNHQM VQEDQSFCNM FDETTSSSAG YWAWPDHHPQ PHHFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524329.10.0PREDICTED: homeobox-leucine zipper protein HAT7
SwissprotQ004661e-124HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLB5RID51e-121B5RID5_ARATH; At5g15150
STRINGXP_010524329.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-104homeobox 3