PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524125.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 348aa    MW: 37761.8 Da    PI: 9.2376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12283328655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik+Lq
  XP_010524125.1 283 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKELQ 328
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.354277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15280342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-11281332No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14282341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MYPSPPSPPS PPHNSDVSGE RSRYGSAVGT TRDLSSLGSQ FPPPPPPQQQ HRSNVVGHYL  60
AGDYYSSSFG SDSGNCNVMA GSSIYQKDSG KNVMQSTSGF NDQMEGDSNG GGGASSSSLF  120
RHRSSPPGFF NQQISSTDRN GFSLGGRGGG GDRRLPSRSK AEVGFPAASG QDRRSLSRIP  180
EVVETTAVNA GVNAASGSSC MSFGMDNRRH HSWDASSSSN ISFTIDQPGK RSKTTDFFTL  240
ETQFSMPQTS LEIERMKNLM NIPEDSVPCR VRAKRGCATH PRSIAERERR TRISGKLKKL  300
QELVPNMDKQ TSYADMLDLA VEHIKELQHQ VEKLIKEAEK CNCGACKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524125.10.0PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW812e-90BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD91e-112R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010524125.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.23e-94bHLH family protein