PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39986.9 Da PI: 6.1907 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5e-14 | 158 | 204 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L XP_010523404.1 158 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 204 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 158 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-15 | 159 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-15 | 159 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-13 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.76E-5 | 168 | 207 | No hit | No description |
CDD | cd04873 | 2.02E-6 | 246 | 314 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MCAKKEEEGD CSRAMNNIQN YQNNLLLSQQ QQPTSSDIFG TSNNAGFMSI FPQDHVSPVV 60 PWPPPIQPFN PTRESDPFLL PSPPASFYGN FFNRSRFGYE GFGATSAHHH QHEHLRILSE 120 ALGPVVQAGT GHPFGLQAEL GKMTAQEIMD AKALAASKSH SEAERRRRER INNHLAKLRS 180 ILPNTTKTDK ASLLAEVIQH VKELKRQTSQ IAETNPVPTE TDEITVDVSE EAVEEQQDGK 240 FVIKASICCD DRSDLLPDLI KTLKALRLKT LKAEITTVGC RVKNVLLVTG EESNIGDEQM 300 YCIGSIQEAL RAVMDKSSVE ESSASGNAKR QRMSSNNGIT IVEPQQQQQQ QRIEVDGRGL 360 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523404.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523404.1 | 0.0 | PREDICTED: transcription factor bHLH30-like isoform X1 | ||||
Swissprot | Q9S7Y1 | 1e-155 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1J3GAQ2 | 1e-160 | A0A1J3GAQ2_NOCCA; Transcription factor bHLH30 | ||||
TrEMBL | V4JST7 | 1e-160 | V4JST7_EUTSA; Uncharacterized protein | ||||
STRING | XP_010523404.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-119 | bHLH family protein |
Publications ? help Back to Top | |||
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