PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GATA | ||||||||
Protein Properties | Length: 322aa MW: 34597.3 Da PI: 6.6637 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.2 | 6.4e-15 | 225 | 262 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg ++ Tp++Rrgp g++tLCnaCGl++ kg++ XP_010520838.1 225 CTHCGISSkcTPMMRRGPLGPRTLCNACGLFWSYKGTM 262 ******999***********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.598 | 89 | 124 | IPR010399 | Tify domain |
SMART | SM00979 | 1.7E-11 | 89 | 124 | IPR010399 | Tify domain |
Pfam | PF06200 | 6.7E-11 | 91 | 123 | IPR010399 | Tify domain |
Pfam | PF06203 | 8.9E-15 | 156 | 198 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.55 | 156 | 198 | IPR010402 | CCT domain |
SMART | SM00401 | 7.7E-14 | 219 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.884 | 219 | 279 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-12 | 220 | 272 | No hit | No description |
CDD | cd00202 | 1.14E-13 | 224 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 224 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 225 | 252 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.5E-12 | 225 | 262 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MYGPHPQAMN NANQIGSTGA GASASAGEDD GFGSAATSRH ITYDGGVSMD EIPRHDSMYV 60 HGGVPELVPH GSELVPHRSE SSDLMVSRQP EGPNQLTLSF RGQVYVFDAV GPDKVDTVLS 120 LLGGCPELSP GPQGMETPQQ NLPVLEYQNQ CSLPQRAQSL DRFRKKRDAR CFEKKVRYGV 180 RQEVALRMPR NKGQFSSSKK PDSTYSSGTD QESTQNDDGH PNISCTHCGI SSKCTPMMRR 240 GPLGPRTLCN ACGLFWSYKG TMRDLSKKFD DNQSLIVKQG DGDADTDAAA DANNSNAGAV 300 IHGRKTLVCV AGGDNSSFSG DH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520838.1 | 0.0 | PREDICTED: GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 1e-140 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | D7M8T9 | 1e-140 | D7M8T9_ARALL; Zinc-finger protein expressed in inflorescence meristem | ||||
STRING | XP_010520838.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-124 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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