PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520044.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 385aa    MW: 43864.5 Da    PI: 7.0644
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-32197251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_010520044.1 197 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 251
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-17195251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28196252IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23197252IPR006447Myb domain, plants
PfamPF002491.4E-8201250IPR001005SANT/Myb domain
PfamPF143796.2E-21284331IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MENINFEFSH ASSEGRIQPQ TQPQPLLQTQ FGVQDMNVSQ SHYSQQPSGN WSEPFSGFPP  60
YDCTTAANPS FSVQCSSSKP YVSSFHAYHH HQPPCSEAQG FSLDQSESSN TLQSLVKSSS  120
SHPPSSQFFK PNASPGSYSV SFEANQDHPQ ELCKNYINSS NVTQLNFSSQ NNQYNQSNPR  180
FHRPNPSPSS REVVGSKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILK LMDSEGLTIF  240
HVKSHLQKYR IAKYIPDSQE ESWIYIFAGK YEKKACEKEM HTGVQIKEAL QLQLDVQRHL  300
HEQLEIQRSL QLRIEEQGKQ LKMMLEQQQK TKESLFKAQK NRSSLPDSDD SRPFSEELEA  360
EISTPESFGN TQLRSKDKLR NQENA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-23197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520044.10.0PREDICTED: myb family transcription factor PHL5-like isoform X1
SwissprotQ0WVU31e-120PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLD7LZU11e-127D7LZU1_ARALL; Uncharacterized protein
STRINGXP_010520044.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-100G2-like family protein