PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519853.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 392aa MW: 44252.6 Da PI: 7.9667

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.7e-11	105	141	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k +rr+++NReAAr+sR+RKka++++Le+ +L XP_010519853.1 105 TDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 141 5899**************************8655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-5	103	170	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	105	147	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-8	106	136	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	107	147	No hit	No description
CDD	cd14708	1.25E-21	107	159	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-7	109	135	No hit	No description
PROSITE pattern	PS00036	0	110	125	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-32	194	269	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MTELPSILPA LVFMICLVRF SVPAEGKMNT TSTHFVPPRR VGIYEPLHQI GMWGENFKGN 60 GTLNTPCPII VPPDPKLDNM SEDTSHGTAG TPHRFDQEAS TSRHTDKIQR RLAQNREAAR 120 KSRLRKKAYV QQLETSRLKL IQLEQELDRA RQQGFSIGGG VDAASSLSFS GSMNPGIGAF 180 EMEYGHWVEE QNRQICELRA LLHGHASDIE LRMLVDNVMK HYFELFRMKS AAAKADVFYV 240 MSGMWKTSAE RFFLWIGGFR PSELLKVLLP HLDVLTEQQL LDVCNLRQSC QQAEDALSQG 300 MEKLQQTLAE SVAAGQLGEG SYVPQMTSAM ERLEALVSFV NQADHLRHET LQQMYRILTT 360 RQAARGLMAL GEYFQRLRAL SSSWATRQRE PA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MTELPSILPA LVFMICLVRF SVPAEGKMNT TSTHFVPPRR VGIYEPLHQI GMWGENFKGN  60
GTLNTPCPII VPPDPKLDNM SEDTSHGTAG TPHRFDQEAS TSRHTDKIQR RLAQNREAAR  120
KSRLRKKAYV QQLETSRLKL IQLEQELDRA RQQGFSIGGG VDAASSLSFS GSMNPGIGAF  180
EMEYGHWVEE QNRQICELRA LLHGHASDIE LRMLVDNVMK HYFELFRMKS AAAKADVFYV  240
MSGMWKTSAE RFFLWIGGFR PSELLKVLLP HLDVLTEQQL LDVCNLRQSC QQAEDALSQG  300
MEKLQQTLAE SVAAGQLGEG SYVPQMTSAM ERLEALVSFV NQADHLRHET LQQMYRILTT  360
RQAARGLMAL GEYFQRLRAL SSSWATRQRE PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519853.1	0.0	PREDICTED: transcription factor TGA1-like isoform X1
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A384L8H7	0.0	A0A384L8H7_ARATH; TGA1
TrEMBL	B9DGG1	0.0	B9DGG1_ARATH; AT5G65210 protein
STRING	XP_010519853.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]