PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519577.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 488aa    MW: 54365.4 Da    PI: 4.92
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.2e-5191371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeelv +yL+ k++g++ ++ ++i+evdi+k+ePwdLp +  vk++++ew fF++ d+ky++g+r nrat +gyWkatgkd++++
  XP_010519577.1   9 LPVGLRFRPTDEELVRYYLRMKINGHDDDV-RIIREVDICKWEPWDLPdMsVVKTKDSEWLFFCPLDRKYPNGSRMNRATVAGYWKATGKDRKIK 102
                     799************************999.89**************96347788999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s +++ +g+k+tLvfy+grapkg +t Wvmheyr+
  XP_010519577.1 103 SVNKNIIGVKRTLVFYTGRAPKGARTCWVMHEYRA 137
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-575160IPR003441NAC domain
PROSITE profilePS5100554.7599160IPR003441NAC domain
PfamPF023652.4E-2410136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEVLSLDSLP VGLRFRPTDE ELVRYYLRMK INGHDDDVRI IREVDICKWE PWDLPDMSVV  60
KTKDSEWLFF CPLDRKYPNG SRMNRATVAG YWKATGKDRK IKSVNKNIIG VKRTLVFYTG  120
RAPKGARTCW VMHEYRATEK DLAGTNPGQN PFVICKLFKK QQDENATAED SKSDEVEPAI  180
SSPTFAKSSA DELKSENELS EVSLAPETLD RKPIMVAESS LRVAAECHSD QSEPCDQPAE  240
LTSAEIEDLK WLPLDSEFLD FKMFSPLHSQ VQSELGTSFN AFQPGSSDLF SNHSGLQIQT  300
QYGTNDEDSF MAEFLDSILE NPDELSGTVA IPERGEYVLQ SGFCSAAPPA QEQETLACPG  360
PLSSGPADHL SSGTGITIRP RRHSPAQSFI NDFAAQGTAP RRLLLQKRLN GIKLEPENQP  420
EPRFIEKEIE ETTRTASKEG IEKVRTKNTG FIFKKISSMT CSYGGLLRAA VVAVLFLMSV  480
GSLTADLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45416112166NO APICAL MERISTEM PROTEIN
1ut4_B2e-45416112166NO APICAL MERISTEM PROTEIN
1ut7_A2e-45416112166NO APICAL MERISTEM PROTEIN
1ut7_B2e-45416112166NO APICAL MERISTEM PROTEIN
4dul_A2e-45416112166NAC domain-containing protein 19
4dul_B2e-45416112166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519577.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519577.10.0PREDICTED: NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLV4L5I20.0V4L5I2_EUTSA; Uncharacterized protein
STRINGXP_010519577.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-175NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]