PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519326.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30929.6 Da PI: 4.4632

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.3e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k XP_010519326.1 58 KKRRLSVEQVKALEKNFEIENKLEPERKVRLAMELGLQPRQVAIWFQNRRARWK 111 456899***********************************************9 PP
2	HD-ZIP_I/II	125	3.4e-40	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la eLglqprqva+WFqnrRAR+ktkqlE+d+ Lk+++d+lk+++++L++++++L ++lke XP_010519326.1 57 EKKRRLSVEQVKALEKNFEIENKLEPERKVRLAMELGLQPRQVAIWFQNRRARWKTKQLERDFLLLKSNFDSLKRNRDALQRDNDSLLHQLKE 149 69***************************************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-19	53	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	53	113	IPR001356	Homeobox domain
SMART	SM00389	6.1E-18	56	117	IPR001356	Homeobox domain
CDD	cd00086	1.23E-17	58	114	No hit	No description
Pfam	PF00046	4.0E-16	58	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	64	112	IPR009057	Homeodomain-like
PRINTS	PR00031	2.0E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-12	113	154	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKRSFGGSDS LGVFMSVCTT TGDEQMISPR SCTNFLYFPA MAEEEEEGCH VAAGEGEKKR 60 RLSVEQVKAL EKNFEIENKL EPERKVRLAM ELGLQPRQVA IWFQNRRARW KTKQLERDFL 120 LLKSNFDSLK RNRDALQRDN DSLLHQLKEL RAQLNIEGTV REGEEAAPPP PATDNDVPEV 180 SHREPPPPPP LTAEIEYDMF DIFPGAESFK DGPADSSGSS AVLSEECHSS TTAAAEMTLG 240 CFGNFVKMEE HGDLFTGEEA CKLFADDEQW YCSDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269\|PubMed:12678559}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00587	DAP	Transfer from AT5G65310	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519326.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:12678559, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519326.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-5
Swissprot	P46667	1e-103	ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBL	A0A1J3CE44	1e-110	A0A1J3CE44_NOCCA; Homeobox-leucine zipper protein ATHB-5
STRING	XP_010519326.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12986	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	1e-101	homeobox protein 5

Publications ? help Back to Top
Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Stamm P, et al. The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination. Plant Physiol., 2017. 173(1): p. 907-917 [PMID:27872245]