PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519282.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 404aa    MW: 45676.2 Da    PI: 6.4426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.71.6e-126334031373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++c +a+s++ +   + l++r + l+s +g+p+qRl ay++eAL ar a+s+s++y++l ++e +     + l+++++++e++P+lkf++
  XP_010519282.1  33 LKQLLMACSRALSDNRTDYFEILIERARSLVSITGEPVQRLGAYLVEALVARKAESGSNIYQSLLCKEPK---GRDLLSYMQILYEICPYLKFGY 124
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI +a  +++ +HiiDf+i+qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  + e l ++g+rL ++  ++++p+ef++l  +++ +
  XP_010519282.1 125 MAANGAIADACRNKDWIHIIDFQIGQGTQWITLLQALAARPNGPPHVRITGIDDPVSKyaRGEGLDAVGRRLDHLSFKFNIPVEFHALPDESIPE 219
                     *******************************************************999999**************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++p+Ea+aVn+ l+lh+++desv+++++rd +L+ vksl+P + +++eqe+++n+++Fl+rf+e+l+yy a+f+sl+++lpre  eri
  XP_010519282.1 220 ITPEMLGIRPDEAVAVNFPLHLHHTPDESVDVTNPRDGLLRKVKSLNPVITTLIEQESNTNTTPFLTRFAETLDYYLAMFESLDETLPRERTERI 314
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+++ivnvvaceg er+erhe l+kWr r+++aGF+++pls ++++ +++llr ++ d y++ e++g+l+lgWk+r L+s+SaW
  XP_010519282.1 315 NVEQHCLAKDIVNVVACEGGERVERHELLGKWRLRMTMAGFRTYPLSPFVNSVIRTLLRSYSPD-YTLMEKDGALLLGWKHRFLISASAW 403
                     **************************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.4117385IPR005202Transcription factor GRAS
PfamPF035145.7E-12433403IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSPQVEDEVP GRGPSKQRSR AWTEGFGNSP DNLKQLLMAC SRALSDNRTD YFEILIERAR  60
SLVSITGEPV QRLGAYLVEA LVARKAESGS NIYQSLLCKE PKGRDLLSYM QILYEICPYL  120
KFGYMAANGA IADACRNKDW IHIIDFQIGQ GTQWITLLQA LAARPNGPPH VRITGIDDPV  180
SKYARGEGLD AVGRRLDHLS FKFNIPVEFH ALPDESIPEI TPEMLGIRPD EAVAVNFPLH  240
LHHTPDESVD VTNPRDGLLR KVKSLNPVIT TLIEQESNTN TTPFLTRFAE TLDYYLAMFE  300
SLDETLPRER TERINVEQHC LAKDIVNVVA CEGGERVERH ELLGKWRLRM TMAGFRTYPL  360
SPFVNSVIRT LLRSYSPDYT LMEKDGALLL GWKHRFLISA SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-594040326378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519282.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519282.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2P6QBM10.0A0A2P6QBM1_ROSCH; Putative transcription factor GRAS family
STRINGXP_010519282.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-169GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]