PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518919.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 343aa    MW: 38508.2 Da    PI: 4.7332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12173216654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  XP_010518919.1 173 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 216
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10174216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-5174228No hitNo description
Gene3DG3DSA:4.10.280.109.5E-17174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00758269310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MELTQMSVLE ELLAQRRTEN SIWANTSNLV NNGGFTTTDQ FFTNSCNFDY YCFNDDDATI  60
HSSSLMDLIS PPLPPPLLHQ PPPSPPPPQV SGFDYHLLEA LQEMMESTSS SPPLILAQAH  120
QEENNNVINN STTYSSPLME ESRSFSVGYC GGGETNKKNS KSKKLEGQPS KNLMAERRRR  180
KRLNDRLSML RSIVPKISKM DRTSILGDAI DYMKELLDKI NKLQEEEQEL GSSHDDDSKL  240
FADLNALNAN ESMVRNSPKF EVERRETNTR VDICCSPKPG LILSTVNTLE NMGLEIQHCV  300
ISCFGDFSMQ ASCSEVAEER DLMRSEDVKQ ALFRNAGYGG RCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175182ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518919.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL11e-134BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3P5YIV81e-142A0A3P5YIV8_BRACM; Uncharacterized protein
TrEMBLM4E6K01e-142M4E6K0_BRARP; Uncharacterized protein
STRINGXP_010518919.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-132beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]