PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010113460.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 32112.7 Da    PI: 6.3468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010113460.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.9e-2465115150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50 
                     k ien++nrqvt+skRr+gi KKAeEL vLCda+v++i++s++  ++ ey+
  XP_010113460.1  65 KLIENQTNRQVTYSKRRKGIHKKAEELAVLCDAKVSLIMISHNHtRMDEYA 115
                     569**************************************9852577876 PP
2K-box76.66.7e-26128226199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+++g +l+ea++e+++q+l+  k+++ nL+re+R+++G dL+ Ls++eL qLe+ + +++++iR kK++ +++q+++++k+ k+l+++n +L 
  XP_010113460.1 128 YQSTKGIDLWEAHYEKMKQKLQEHKEKNYNLRREIRQRMGYDLSGLSYQELCQLEHSMSSAVETIRLKKEHKITTQTNTTKKRVKSLKDINLSLV 222
                     78899999************************************************************************************999 PP

           K-box  96 kkle 99 
                     + ++
  XP_010113460.1 223 HDFQ 226
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.19857107IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-2457117IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-2858152IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-175979IPR002100Transcription factor, MADS-box
PfamPF003192.8E-1967107IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-177994IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-1794115IPR002100Transcription factor, MADS-box
PfamPF014862.5E-16139224IPR002487Transcription factor, K-box
PROSITE profilePS5129713.821141231IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDYKPDLTYE GHDHDHYGQY LDKYYSCDDH QDQDQDQDHD QEEDQDRDHD QKMKPKTGRG  60
SIQQKLIENQ TNRQVTYSKR RKGIHKKAEE LAVLCDAKVS LIMISHNHTR MDEYASRDTT  120
TKEMIDLYQS TKGIDLWEAH YEKMKQKLQE HKEKNYNLRR EIRQRMGYDL SGLSYQELCQ  180
LEHSMSSAVE TIRLKKEHKI TTQTNTTKKR VKSLKDINLS LVHDFQAMRT CEDPSYGLVE  240
DKVEEECESM AELANGASNL YTFRHENRLL GG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010113460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032905.11e-160agamous-like MADS-box protein AGL30
SwissprotQ003J28e-67TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLW9SNB20.0W9SNB2_9ROSA; Floral homeotic protein DEFICIENS
STRINGXP_010113460.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]