PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112757.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 466aa    MW: 49884.2 Da    PI: 8.8308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112757.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-114672127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ ++C +++rtG+C yG rC+++H++
  XP_010112757.1 46 PGVPNCVYYMRTGYCGYGVRCRYNHPR 72
                    5789*********************96 PP
2zf-CCCH40.16.1e-1393117327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++tGtCk+G++CkF+H++
  XP_010112757.1  93 EPVCQYYLKTGTCKFGASCKFHHPK 117
                     789********************96 PP
3zf-CCCH345.1e-11138162226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C+++++tG+Ck+G +CkF+H+
  XP_010112757.1 138 GETECSYYLKTGQCKFGITCKFHHP 162
                     7789********************8 PP
4zf-CCCH35.41.8e-11296320327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++rtG Ck+G++C+++H++
  XP_010112757.1 296 EPECQYYLRTGDCKFGSSCRYHHPR 320
                     799********************96 PP
5zf-CCCH35.51.7e-11341365226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f++++G+Ck+G++CkF H+
  XP_010112757.1 341 GVQPCTFYLQNGHCKFGSTCKFDHP 365
                     6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4134573IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-64572IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-94772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67690118IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-790117IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-595117IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286136164IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5139164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464293321IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4293320IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9296320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4299320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666339367IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6339366IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6341370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5343365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MELYGRSPAR NGSNQPEWSP DAGETGLEES MWQLGLTGGE SYPERPGVPN CVYYMRTGYC  60
GYGVRCRYNH PRDRAAVAAA VRATGEYPER VGEPVCQYYL KTGTCKFGAS CKFHHPKHGG  120
GSLSQAPLNI YGYPLRPGET ECSYYLKTGQ CKFGITCKFH HPHPAGTSVT ASAPQFYPPV  180
QSPSVPIPEQ FGGPSTSLRV ARPPLLPGSY VQGAYGPVLF PPGVVPIPGW NPYSAPVSPV  240
LSPGAQPTVG AASMYGVTHL SSSTAALARP YPSLPSSIGA SSSSPKEQVF PERHGEPECQ  300
YYLRTGDCKF GSSCRYHHPR DRVMPRTNCL LSPVGLPLRP GVQPCTFYLQ NGHCKFGSTC  360
KFDHPIGTMR YSPSASSLID MPVAPYPVGS LLATLAPSST SSELSKKESY SARMPSTGNT  420
STSSVGLIFS QTGSVSLTDV QLSTQSSVPL SSSRSTRQGG EVRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112757.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_024032024.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY60.0W9SLY6_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein