PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112062.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Whirly
Protein Properties Length: 734aa    MW: 81207.4 Da    PI: 9.4503
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112062.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-5281371129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeel+++yLkkkv+ +k+e+ evi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk +
  XP_010112062.1   8 VPPGFRFHPTDEELLHYYLKKKVSFHKFEM-EVIREVDLNKLEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCI 101
                     69****************************.99**************963433332556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  XP_010112062.1 102 RN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                     *9.8899****************************85 PP
2Whirly189.94.1e-594525872137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+kaal+v +v+ptf++ldsg ++++r+G ++l++++a++erkydWekkq fal atev++l++++s++sceffhdp++ +sn+G+vrk+l++
  XP_010112062.1 452 VYKGKAALSVTPVLPTFTKLDSGLRVVDRHGVMMLKFIPAIGERKYDWEKKQLFALNATEVGSLISMGSNDSCEFFHDPSMLSSNAGQVRKSLSI 546
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     +P++ G G++++l+v n+++k+ ++f vP + aefav++++
  XP_010112062.1 547 KPHATGGGYMISLTVVNNILKTRDNFAVPFTTAEFAVVKTV 587
                     **************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-577166IPR003441NAC domain
PROSITE profilePS5100557.8748166IPR003441NAC domain
PfamPF023653.5E-279136IPR003441NAC domain
SuperFamilySSF544472.35E-59446606IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.109.2E-67447604IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.6E-55452587IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGSSSGSVPP GFRFHPTDEE LLHYYLKKKV SFHKFEMEVI REVDLNKLEP WDLQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATSAG FWKATGRDKC IRNTFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDQD HDPNNLSHDS SSSSEDGWVV CRVFKKKNLF KVGGNNEGGG  180
GSSNNIINSE ITRSSTTTCH HHGHLNINTA NNNANAFNSN MQASSNQYHL LRQPSHNLMM  240
QQPSTTSFEL NNKPPTPLHH ELAFHYPPPA YSHPSLIPNA YDSTALNRLQ QVKQLMITNA  300
ATRADCESGS DYPPCEPGLE VATAAQHVNI STSTTAGRDH DQAQAGMTEW PTMLDRMVSP  360
SAASAANNND TLPSVSAHIN HLSLRASTAG TGEMDFWGYA KNQSSKNLLY GKDVNLSDGL  420
PLHSFTSRAG ISTAGPGQTL GVKGSIAAPY TVYKGKAALS VTPVLPTFTK LDSGLRVVDR  480
HGVMMLKFIP AIGERKYDWE KKQLFALNAT EVGSLISMGS NDSCEFFHDP SMLSSNAGQV  540
RKSLSIKPHA TGGGYMISLT VVNNILKTRD NFAVPFTTAE FAVVKTVCSY ALPHILGWDR  600
LTNKLPRDLP EAHASSSKCH LGVSIILTNQ KPSFSLSLHF LSLSPRTADP PLARFQRSFS  660
TPPSSLEKSY RAESGLVSSS RQLRRTTPHS PAKVLKNTQT FDRDIFVVRC PIEVIPVPID  720
SERRDKENCT SSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-774436048169StWhy2
3n1i_A1e-774436048169protein StWhy2
3n1j_A1e-774436048169Protein StWhy2
3n1k_A1e-774436048169protein StWhy2
3n1l_A1e-774436048169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031614.10.0protein BEARSKIN2
SwissprotQ9SV871e-117BRN2_ARATH; Protein BEARSKIN2
TrEMBLW9SHN50.0W9SHN5_9ROSA; Protein BEARSKIN1
STRINGXP_010112062.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-112NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]