PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110604.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 547aa MW: 61019.3 Da PI: 7.1605

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110604.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+sF++ ++ H ++ XP_010110604.1 117 FECPICGQSFRTEEEVSEHVESC 139 89**************9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	3.2E-9	27	58	No hit	No description
PROSITE profile	PS50157	9.078	117	146	IPR007087	Zinc finger, C2H2
CDD	cd09212	3.21E-20	166	261	No hit	No description
SMART	SM00580	1.1E-15	179	246	IPR018997	PUB domain
SuperFamily	SSF143503	6.02E-18	179	262	IPR018997	PUB domain
Pfam	PF09409	2.5E-16	181	251	IPR018997	PUB domain
SuperFamily	SSF54236	3.36E-12	401	513	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	3.2E-9	418	480	No hit	No description
PROSITE profile	PS50033	9.744	430	514	IPR001012	UBX domain
Pfam	PF00789	1.9E-5	431	480	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MDDVKDKVKG FMKKVNSSLS SSSSSSGKFK GQGRVLGSAS SGPSNPIPHR SSQIPQSKPL 60 SAPNSKPANS PKTPSVSDQR RSDSSNPDRE PANGFDPFDT LITIGKRSQN GYSVQVFECP 120 ICGQSFRTEE EVSEHVESCV NNNSDNTVEN GGSNNENDSS ESELEACIGA FLSGELASGS 180 VEIVFKLLNN VVREPENAKF RRIRMGNAKI KEAVVDVAGG VELLEFVGFE LKEEDGEMWA 240 AMEVPSEERI RLIKHAIRLL EPQKVQEPGR TSDSKPVASV EVEEKVEPKK IDRQILRLRE 300 ISEVNKLIFY SRERESPISV TRHDDELVEK NSLHQYNKLS FCDYKKRALR SSNSHKLSLI 360 SARSGLETKT KVFFSVPENV AAKIELPDSF YNLSLEEVKR EAEMRKKKLA DSQLLIPKSY 420 KEKQAKAAKR RYKRTIIRIQ FPDGVVLQGI FNPWEPTSSL YQFVSSALKE PSLEFELLHP 480 LVIKRRVIPC FPAAGQKPTI LEDEDLVPAA LVKFRPIETD SLVFTGLRNE LLEIMEPLVV 540 DTAVALA

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MDDVKDKVKG FMKKVNSSLS SSSSSSGKFK GQGRVLGSAS SGPSNPIPHR SSQIPQSKPL  60
SAPNSKPANS PKTPSVSDQR RSDSSNPDRE PANGFDPFDT LITIGKRSQN GYSVQVFECP  120
ICGQSFRTEE EVSEHVESCV NNNSDNTVEN GGSNNENDSS ESELEACIGA FLSGELASGS  180
VEIVFKLLNN VVREPENAKF RRIRMGNAKI KEAVVDVAGG VELLEFVGFE LKEEDGEMWA  240
AMEVPSEERI RLIKHAIRLL EPQKVQEPGR TSDSKPVASV EVEEKVEPKK IDRQILRLRE  300
ISEVNKLIFY SRERESPISV TRHDDELVEK NSLHQYNKLS FCDYKKRALR SSNSHKLSLI  360
SARSGLETKT KVFFSVPENV AAKIELPDSF YNLSLEEVKR EAEMRKKKLA DSQLLIPKSY  420
KEKQAKAAKR RYKRTIIRIQ FPDGVVLQGI FNPWEPTSSL YQFVSSALKE PSLEFELLHP  480
LVIKRRVIPC FPAAGQKPTI LEDEDLVPAA LVKFRPIETD SLVFTGLRNE LLEIMEPLVV  540
DTAVALA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	1e-12	381	514	19	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110604.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030702.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-88	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	W9S5N5	0.0	W9S5N5_9ROSA; UBX domain-containing protein 6
STRING	XP_010110604.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Link Out ? help Back to Top
Entrez Gene	21387503

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]