PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 319aa MW: 34528.9 Da PI: 6.6531 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010109936.1 135 YECKTCNRTFPSFQALGGHRASH 157 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00028 | 213 | 235 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_010109936.1 213 HECSICGSEFTSGQALGGHMRRH 235 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.4E-13 | 134 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.84E-8 | 135 | 157 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 135 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.84E-8 | 208 | 235 | No hit | No description |
Pfam | PF13912 | 9.7E-12 | 212 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEASHEEFVG SSNDNTNNNQ THHMIAKGRR TKRQRPSSPL ISSSSSSACG GEGGRGEEYG 60 NSFSSPPTTS SGGGGGGEVY ESTEEEEDMA NCLILLAQGN HRQYHRTHQQ EAAEDHKVIA 120 NNTTSSTNKA GLYAYECKTC NRTFPSFQAL GGHRASHKKP KTAAAVDDKK PTILSEELED 180 NQDDKEEHHV FLLNKTLQKV GIISTSTITN KVHECSICGS EFTSGQALGG HMRRHRAAVT 240 VPPNSNVVVS TTASVSASAA MTTNNSLSLH DEVEIIKRRR PNILQLDLNL PAPEDDHRSG 300 TESKFALVFS APALVDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109936.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | W9SSQ8 | 0.0 | W9SSQ8_9ROSA; Zinc finger protein ZAT5 | ||||
STRING | XP_010109936.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-50 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21395018 |