PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 25936.6 Da PI: 10.1279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 78 | 130 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ h e+Er+RR+++ + f Lr+l+P + ++K s e +Av YI++L+ XP_010109066.1 78 KRKIHREIERQRRQEMATLFVSLRSLIPLEF--IKGKRSTHEYMSEAVTYINHLK 130 7999*************************65..********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-15 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.91E-9 | 75 | 134 | No hit | No description |
PROSITE profile | PS50888 | 13.637 | 77 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-10 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-11 | 78 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-6 | 83 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE pattern | PS00282 | 0 | 174 | 197 | IPR002350 | Kazal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTLKPSKNLV EMFPLRQSNK LNSYINFFNA HQNCQISEDL ILMSHASADV GGRRFNNSTG 60 KSQRKRKFTD QNSTDNEKRK IHREIERQRR QEMATLFVSL RSLIPLEFIK GKRSTHEYMS 120 EAVTYINHLK KKIRELETKR NELKELLNLR NNINQIDSEN RKYSNRCFTI RPSCGGIQVV 180 ICSPYGEEYR TVCRFTCMEQ TELEQRLSEV NPSLKHMISQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 89 | KRKIHREIERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109066.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9S9E3 | 1e-161 | W9S9E3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109066.1 | 1e-162 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 7e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21396131 |