PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 326aa MW: 36766.7 Da PI: 7.0551 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 100 | 152 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe+ +++ e++ +LAk+lgL+ rqV +WFqNrRa++k XP_010108964.1 100 KKRLNLEQVKTLEKSFEMGNKLEPERKLHLAKSLGLQPRQVAIWFQNRRARWK 152 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.6 | 1.2e-41 | 98 | 190 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+ eqvk+LE+sFe+ +kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lk+++d lk++n++L++++++L+++l++ XP_010108964.1 98 EKKKRLNLEQVKTLEKSFEMGNKLEPERKLHLAKSLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKKQFDLLKADNDALHSQNKKLHAQLSA 190 69***************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.714 | 94 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 96 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.4E-18 | 97 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.90E-16 | 99 | 155 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 100 | 152 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 102 | 162 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-5 | 125 | 134 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-5 | 134 | 150 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.8E-15 | 154 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAFPPHSFMF QAHQEDHDPH QDHPHHQQHF LGGGGHHAPP FMLLKRSVSF SGVDDHGHHD 60 HHHHHHNMRC EELLMQGGGG GGEDEALSDD GSQSIGGEKK KRLNLEQVKT LEKSFEMGNK 120 LEPERKLHLA KSLGLQPRQV AIWFQNRRAR WKTKQLEKDY DVLKKQFDLL KADNDALHSQ 180 NKKLHAQLSA LKGGSTRDLN EGGRENHKKE GEGSWSNNGS ENSSDVNLEI SRTTTITQVI 240 NTCSSASSQI LNGKTLFPST LRPTSITQLL VQGSPRSEHH PPHQMVQSSD NENLCNMFVN 300 GGVNVNAVEQ DHQQGFWPWP EQPYFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00322 | DAP | Transfer from AT3G01220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108964.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108964.1 | 0.0 | homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | W9S156 | 0.0 | W9S156_9ROSA; Homeobox-leucine zipper protein ATHB-20 | ||||
STRING | XP_010108964.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-65 | homeobox 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21409786 |