PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108899.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 363aa    MW: 40388.1 Da    PI: 7.5954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108899.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.11.7e-14289314126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yG+ C+FaHg
  XP_010108899.1 289 FKTELCNKWQQTGACPYGEHCQFAHG 314
                     79***********************8 PP
2zf-CCCH17.19.9e-06327352126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte+Cr  + +  C+yG rC+F H+
  XP_010108899.1 327 YKTEICRMVLSGERCPYGHRCHFRHS 352
                     9******999855**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-18283321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-10285320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986288316IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-9288315IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11289314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-9322357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-13322355IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751326354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEKNAFSPPS EIKTASPSSP PPLAMAQGTR QNFSENSPEA RDFGAEFFSM YRSIFPAKSS  60
PLPSSLSLTP STRSSSAGGG GGCYEDESTT EHRLIQARLI LEHQQLNDQY DLFQTHLRNL  120
NKEIDFLRRE NAELRSVNTE LLKILSSPAA FQGFLLSSGA YPNQSLLDSF RRLDIGGVLA  180
PDHGHGVEDV SDISPTSVME TNRIERPSAE RVSLPKSISV RSTGYQKAIS HSPGNSSREG  240
PGRSSNRPRS VPNPIASRTE TQRVYVPGVG EKEEESGGLE LDVYNQGMFK TELCNKWQQT  300
GACPYGEHCQ FAHGITELRP VIRHPRYKTE ICRMVLSGER CPYGHRCHFR HSLTEQERLL  360
LPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-20289355470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108899.20.0zinc finger CCCH domain-containing protein 14
TrEMBLW9S1010.0W9S101_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010108899.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-69C3H family protein