PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25940.6 Da PI: 8.7514 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 34 | 76 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L XP_010108742.1 34 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 76 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.698 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-17 | 27 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.80E-13 | 31 | 81 | No hit | No description |
SMART | SM00353 | 4.0E-15 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 33 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-11 | 34 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MWSSWGLDEA FSGYYDSSSP DGAASSSAAS KNIVSERNRR KKLNERLFAL RAVVPNISKM 60 DKASIIKDAI DYIQELHEQE RRIQAEIMDL ESNKTKKINP GYYHQDHFIE QELPILLRSK 120 KKKTDQHLYD SGGSRNCSTS PIEVLELRVT YMGEKTLVVS LTCSKRTDTM VKLCEVFESL 180 KLKIITANIT AFSGRLLKTV LIEAPPIGLT RDDLTTGGRS YISWQLGTDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 32 | 76 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108742.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029453.1 | 1e-149 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 6e-76 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | W9S0G4 | 1e-170 | W9S0G4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108742.1 | 1e-170 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21386546 |