PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108684.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 361aa    MW: 40798 Da    PI: 6.8448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108684.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.3e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  XP_010108684.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
                    6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.563153IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-25294IPR002100Transcription factor, MADS-box
CDDcd002664.02E-26281No hitNo description
PRINTSPR004041.1E-16323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCSGK  60
RSIEEVIAKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIQEFLGTSS QTEELSSQAS  120
FFQSQLSEIH KRLSYWTNPD KIDSVEHLGQ MENSLRESLN RIQTHKEILQ KQLISLEHSS  180
QFQNGIHLPF RVGAEQQLQP LSWIPNNDGQ HIVLPDDPSL IPHRDIECST SSSFGSYSGY  240
FGMGRNLDIS NSGQETGIVN ELSQTAPMRL PLGGGQFPYV PYNLNVLNDT KFRPQAEMNP  300
QENAVDYHVN GNFEVPRHAY ETTHQSTWAS TSGPYDAVSI LDETLYPQLS HPCYDKLEGI  360
Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029431.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-112AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLW9S8B50.0W9S8B5_9ROSA; MADS-box transcription factor 16
STRINGXP_010108684.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-83AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]