PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108472.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bZIP

Protein Properties

Length: 420aa MW: 44872.7 Da PI: 6.8558

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108472.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.9e-10	223	271	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + XP_010108472.1 223 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 271 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-16	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	221	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	223	274	No hit	No description
Pfam	PF00170	1.5E-8	223	271	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-10	223	277	No hit	No description
CDD	cd14703	4.07E-23	224	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MSTEEMQDPQ SNKNNPISTI LKSRSIPSHN PNAINVTSSS ALKHRLAPLP PFAGAATSSS 60 SSSSAATHTM LGNPNPNPAT AGVFSKGGGG HRRAHSEVSF RLPEDMMDLS PSDPFNVGSS 120 TASLEEIGSE DDLFSTYIDV DKLGGAGNGG SCADQSGGNG VNGGEVKAEG GGGEGEKSWS 180 GRPRHRHSSS VDGSSTSVFG EIMDAKKAMP PDKLAELWTI DPKRAKRILA NRQSAARSKE 240 RKARYIQELE RKVQTLQTEA TTLSAQLTLF QRDTTGLSTE NTELKLRLQA MEQQAQLRDA 300 LNEALKKEVE RLKIATGEMI SPSESFNLGM HQMPYNPSGY FSLQQQAGSG HQNMQMPPFN 360 HSQASMSAHH MQQSNSHPLT DLLQNDPVGR LQGLDISSKG SSLVKTEGPS ISASESSATF

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MSTEEMQDPQ SNKNNPISTI LKSRSIPSHN PNAINVTSSS ALKHRLAPLP PFAGAATSSS  60
SSSSAATHTM LGNPNPNPAT AGVFSKGGGG HRRAHSEVSF RLPEDMMDLS PSDPFNVGSS  120
TASLEEIGSE DDLFSTYIDV DKLGGAGNGG SCADQSGGNG VNGGEVKAEG GGGEGEKSWS  180
GRPRHRHSSS VDGSSTSVFG EIMDAKKAMP PDKLAELWTI DPKRAKRILA NRQSAARSKE  240
RKARYIQELE RKVQTLQTEA TTLSAQLTLF QRDTTGLSTE NTELKLRLQA MEQQAQLRDA  300
LNEALKKEVE RLKIATGEMI SPSESFNLGM HQMPYNPSGY FSLQQQAGSG HQNMQMPPFN  360
HSQASMSAHH MQQSNSHPLT DLLQNDPVGR LQGLDISSKG SSLVKTEGPS ISASESSATF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229678	1e-107	KP229678.1 UNVERIFIED: Boehmeria nivea Basic leucine zipper transcription factor-like (bZIP12) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108472.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-106	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	W9SAC2	0.0	W9SAC2_9ROSA; Transcription factor RF2b
STRING	XP_010108472.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-95	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	21393954

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]