PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010108453.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 230aa MW: 24924.5 Da PI: 7.1205

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010108453.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.7	1.7e-42	78	177	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_010108453.1 78 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLA 172 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010108453.1 173 KAQAE 177 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	77	178	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-43	78	175	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEFKGKAPTL PRITVPAPFS SSHSPPSSSS PTPNSSQLSS PTTTFPSPPN SYQSSPTSAV 60 TPVPLPPPPP PPPVVLSPCA ACKILRRRCV DKCVLAPYFP PTEPLKFTIA HRVFGASNII 120 KFLQEIPESQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVSELQAQ LAKAQAELVN 180 MQCQQANLIA LICMDMTQLQ EPNSQQQPYG DTSCFLDDNT LGTTWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	70	189	3	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	70	189	3	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010108453.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108453.1	1e-167	LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-76	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	W9RZL7	1e-165	W9RZL7_9ROSA; Uncharacterized protein
STRING	XP_010108453.1	1e-166	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-63	LOB domain-containing protein 1

Link Out ? help Back to Top
Entrez Gene	21397274