PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HSF | ||||||||
Protein Properties | Length: 379aa MW: 43275.2 Da PI: 4.4529 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118 | 5.7e-37 | 34 | 126 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+yei+ed+++++++sws+ +nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_010107707.1 34 FLTKTYEIVEDPATNHVVSWSRGNNSFVVWDPQNFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKN 119 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + XP_010107707.1 120 IRRRKPS 126 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.6E-62 | 30 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.35E-36 | 30 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.2E-39 | 30 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.0E-32 | 34 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 34 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 73 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-19 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MKSQFVRVKE EFPGGAAAAP QPIEGLHDVG PPPFLTKTYE IVEDPATNHV VSWSRGNNSF 60 VVWDPQNFAM SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKNI 120 RRRKPSQPAQ SSSQQANLDP ACVEVGRFGL DGEVDRLRRD KQVLMVELVK LRQQQQNTRS 180 YLQAMEDRLK RTELKQQQVM NFLSRAMQNP NFVQQLVQQN DKRRELEEAI SKKRRRPIEQ 240 GPSVVDQVVV DDGDDDIGLG QSSGGAENIF VKMEPQDYNI DMGAEFDQEV DELDELTTID 300 MQGMSSGAIS QKNNTELEEE VHGSFSNRDI ELDEGFWINL LNESMEEEVG ILGVDDEEDE 360 EDHVDILAEQ LGFLASSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-27 | 1 | 123 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 1 | 123 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 1 | 123 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 235 | KRRELEEAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107707.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107707.1 | 0.0 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-134 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | W9S5M8 | 0.0 | W9S5M8_9ROSA; Heat stress transcription factor A-6b | ||||
STRING | XP_010107707.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-122 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Entrez Gene | 21396497 |