PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010105555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 26707.7 Da PI: 5.9451 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_010105555.1 92 FSCNYCRRKFYSSQALGGHQNAH 114 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 81 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.23E-7 | 87 | 120 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MITPDINLEC ENDSEVSSQV ASDVAPQDSF PNPSKESTTS SSCLTNIIKL QEDPAPVSLD 60 LSLQFSSSLN PELRGRGEVP THTSVSTNPR VFSCNYCRRK FYSSQALGGH QNAHKRERTM 120 AKRAMRMGIF SGRYNSLASL PLHGSPFRSL GVEAHAAAHQ RTIPSERPDM RGGARFQPGY 180 YGLPVFMEDD DMDLFWPGSF RQVDEGTGGG SELQFAQNSD MNIVTQMPSP RTDSSSPDLT 240 LKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010105555.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105555.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 8e-46 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | W9S2D2 | 1e-180 | W9S2D2_9ROSA; Zinc finger protein 4 | ||||
STRING | XP_010105555.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-48 | zinc finger protein 4 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21402244 |
Publications ? help Back to Top | |||
---|---|---|---|
|