PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23827 Da PI: 10.3194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.2e-11 | 65 | 99 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE e+++da +++G++ Wk++a+ + +R+ ++ XP_010104935.1 65 QWSKEELERFYDAYRMYGKD-WKKVAAVVR-NRSVEM 99 6*****************99.*********.**9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.232 | 61 | 114 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0013 | 62 | 115 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.58E-11 | 62 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-9 | 65 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 65 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-7 | 66 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAPTKKPRVN KRYAGISWYS PVKDVGNPSK SKQRALVSVS PEKDGGNSNK PSQRKKKLSD 60 KLGPQWSKEE LERFYDAYRM YGKDWKKVAA VVRNRSVEMV DALYSMNRAY LSLPEGTASV 120 IGLIAMMTDH YNVLESSDNE QESNDASGLS RRPQKRKRGR DQVSTSKDVF KSYSSADGCL 180 SLLKRKRSDG KITCCFMYWL SQGFERENGN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | RRPQKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104935.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026911.1 | 1e-127 | protein ALWAYS EARLY 2 | ||||
Swissprot | Q6A331 | 1e-52 | ALY1_ARATH; Protein ALWAYS EARLY 1 | ||||
TrEMBL | W9RY29 | 1e-153 | W9RY29_9ROSA; Protein ALWAYS EARLY 1 | ||||
STRING | XP_010104935.1 | 1e-154 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 4e-48 | DNA binding |
Link Out ? help Back to Top | |
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Entrez Gene | 21390100 |
Publications ? help Back to Top | |||
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