PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23523.6 Da PI: 8.9208 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 40 | 92 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k XP_010103343.1 40 KKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 92 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.6 | 1.7e-38 | 39 | 129 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kq+E+ y++Lk+++da+++e+++L++ev +L++ l+ XP_010103343.1 39 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQVERLYDTLKQEFDAISKEKQKLQDEVMKLKAMLR 129 9**************************************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.02E-19 | 24 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-17 | 37 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.32E-15 | 39 | 95 | No hit | No description |
Pfam | PF00046 | 6.2E-17 | 39 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 44 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.4E-5 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.4E-5 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-8 | 94 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEMKHQGMLS EAVSQGLVPG MEMKNNINNS IISSSYGDKK KRLTSDQLDS LERSFQEEIK 60 LDPDRKMKLS RELGLQPRQI AVWFQNRRAR WKAKQVERLY DTLKQEFDAI SKEKQKLQDE 120 VMKLKAMLRD QITWKQVSTG GYTEISGGEE TVESTSGAIR SSSIKSQGTN QHQMAADQCN 180 NIFTMEEYNP VSPPTNYWGH LPSYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 94 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103343.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103343.1 | 1e-153 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 2e-54 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | W9S9Y3 | 1e-152 | W9S9Y3_9ROSA; Putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_010103343.1 | 1e-152 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-56 | homeobox 51 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385854 |
Publications ? help Back to Top | |||
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