PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102696.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 500aa    MW: 55035.1 Da    PI: 8.6678
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102696.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.21.7e-41187264178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+ak+yhr+h++Ce hsk+p v+v g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  XP_010102696.1 187 RCQVEGCNLDLSSAKDYHRKHRICESHSKSPRVIVGGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 264
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-33182249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.06185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39186267IPR004333Transcription factor, SBP-box
PfamPF031105.1E-32188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEWNSKASSL WDWENLFELE AKATENPKKL LQRMDCFVEV DRGISSGSLH SPGDGGGSSA  60
GTGGSGSDLG HASSKSSISA SINSSSIGES KTSNKFTLDG FEPFPKDSRS ENESARVQQP  120
RSSPTPEISA GSGEPLLSLK LGKRMYFKDI CSENNAKSSS APSVAPMSSA TTAKRSKSTC  180
QSNFMPRCQV EGCNLDLSSA KDYHRKHRIC ESHSKSPRVI VGGVERRFCQ QCSRFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQPEAVRLN PARLSSLYDE TQKMSLVFDQ APRLYTRHAA  300
NFTWDHSTDS SKLAHTREYL SRPAKTGAAP GQIFLPNNEM PSSISMLYPQ DSGRLTPNKN  360
TAPEVLHSGL EESVVSTELN ATQDLHRALS LLSTSSWCSR ETKIVSLDTC STALNNTNHH  420
SSCSNGMVQP AMHQMTTTQT QGFPFASEFW QTQQPTAIDA AFPPTPHTRS NSNANATTHF  480
QDLHLIKPPG DTAFYSHHFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261882611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243260KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102696.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025420.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025421.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025422.10.0squamosa promoter-binding-like protein 2
TrEMBLW9RS100.0W9RS10_9ROSA; Squamosa promoter-binding-like protein 12
STRINGXP_010102696.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-65squamosa promoter binding protein-like 2