PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101850.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 394aa    MW: 43045.6 Da    PI: 6.6002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101850.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-164792147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
   XP_010101850.1 47 KGPWSPEEDAILSRLVGKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 92
                     79******************************.***********985 PP
2Myb_DNA-binding543.9e-1799143147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd+++v a++ +G++ W++Iar +  gRt++ +k++w++ 
   XP_010101850.1  99 RKPFSDEEDQIIVAAHAIHGNK-WAAIARLLT-GRTDNAIKNHWNST 143
                      789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7144297IPR017930Myb domain
SuperFamilySSF466894.31E-2944140IPR009057Homeodomain-like
SMARTSM007171.2E-144695IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2548100IPR009057Homeodomain-like
CDDcd001676.86E-144991No hitNo description
PfamPF139211.3E-1550108No hitNo description
PROSITE profilePS5129421.67198148IPR017930Myb domain
SMARTSM007177.2E-1698146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-23101147IPR009057Homeodomain-like
CDDcd001671.14E-11101144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
METNGALTVV SEIDGGGDAE DLSFGGGSGD EAAFAGGGGK ASRDRVKGPW SPEEDAILSR  60
LVGKFGARNW SLIARGIAGR SGKSCRLRWC NQLDPAVKRK PFSDEEDQII VAAHAIHGNK  120
WAAIARLLTG RTDNAIKNHW NSTLRRRCIE LGKVKFEPVN VMEDVSLDKT KASSEETMSC  180
GDVNSFKSME GRDLCTMEHM VDQNEFRLPT EGQFIHEVQE PPTLFRPVAR VSAFSVYNPL  240
DGQEPLSSFR RTALMQGPLV QASKLDTEIF KLLEAECVAR SVPHQCGHGC CGIKNGKNAR  300
TSLLGPEFVD FSEPLAFSSF ELAAIGTDIS NLAWLKSGLE NSTVRAMGDA AGRIISHGSQ  360
VQMGHFEDSR MGNRMLFEER RENLRGIKTN VLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-39441474107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101850.10.0transcription factor MYB1
SwissprotQ425751e-105MYB1_ARATH; Transcription factor MYB1
TrEMBLW9RPM80.0W9RPM8_9ROSA; Transcription factor
STRINGXP_010101850.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-107myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]