PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101559.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 175aa    MW: 20670.7 Da    PI: 10.2752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101559.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-056482523
                    TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                    +Cg sF+ + +Lk+H+++H
  XP_010101559.1 64 KCGASFKKPAYLKQHMQSH 82
                    8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3495987IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-463105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEEAGEKMLI FRDIRRYFCD YSGICRSKKP LIASHILTNH KDEMEKRAET EETKGLKQTN  60
TRKKCGASFK KPAYLKQHMQ SHSHEKSNLN QHVKAAYLKQ KPFACGFAGC SMRFAYKLVR  120
DSHEKTECHV YTHRDFEESD EQFRSRPRGG RKRKYPNVET LIRKRVTPQS IGWHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024801.17e-61LOW QUALITY PROTEIN: transcription factor IIIA
SwissprotQ84MZ43e-25TF3A_ARATH; Transcription factor IIIA
TrEMBLW9RFU21e-129W9RFU2_9ROSA; Uncharacterized protein
STRINGXP_010101559.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.15e-28transcription factor IIIA