PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100611.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 416aa    MW: 46918.1 Da    PI: 6.6352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100611.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+++++ +G g+W+tI++  g+ R++k+c++rw +yl
   XP_010100611.1 29 RGLWSPEEDDKLIKYITTHGHGSWSTIPKLAGLQRCGKSCRLRWINYL 76
                     788*******************************************97 PP
2Myb_DNA-binding491.4e-1582125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_010100611.1  82 KGHFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 125
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-262079IPR009057Homeodomain-like
PROSITE profilePS5129418.7072476IPR017930Myb domain
SuperFamilySSF466891.31E-2926123IPR009057Homeodomain-like
SMARTSM007172.1E-132878IPR001005SANT/Myb domain
PfamPF002494.0E-162976IPR001005SANT/Myb domain
CDDcd001674.50E-113276No hitNo description
PROSITE profilePS5129425.58977131IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2580132IPR009057Homeodomain-like
SMARTSM007173.2E-1581129IPR001005SANT/Myb domain
PfamPF002492.1E-1482125IPR001005SANT/Myb domain
CDDcd001676.60E-1185124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAAEEQVGLC SNIRDNMGHH CCSKQKIKRG LWSPEEDDKL IKYITTHGHG SWSTIPKLAG  60
LQRCGKSCRL RWINYLRPDL KKGHFSEQEE RTIIDVHRIL GNRWAQIAKH LPGRTDNEVK  120
NFWNSCIKKK LIAQGLDPNT HNLLTPNSSK PNNINTVNNN NFFSIHNNKA STVYNFSLDH  180
PKRKTTCSTS ANHTSVFTVN SNANVSRGGH GTASMNYAIM KEDFFKLADN SYSVSIPQLN  240
PGNPSDDHLL QESSSMISSS EYQNPNTVWT DLREQNPTSL MESTSQPSKV MFNIQTSPQN  300
PSGHERLIEE NCLWDIGTSE LGKGSTKQHE ENINTLHDET SIQLLEKASN EEVNNNIHEK  360
MNINDYIRNG GKNEDVAPFD DTSSNFDFDF VDSAILSCGM YCHLSPIADH SDWNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30291317108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100611.20.0protein ODORANT1
TrEMBLW9S2620.0W9S262_9ROSA; Transcription factor
STRINGXP_010100611.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67