PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100050.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 338aa    MW: 37878.7 Da    PI: 4.8197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100050.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-16132228194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+l +sdv++ gr+v+pkk ae h   ++ +e++ l l d +  ++W +k++y  +++s++yv++ ++k+Fv+a+gL++ Dfv+ + ++++++
  XP_010100050.1 132 FKKQLHNSDVSAAGRIVIPKKVAELHlpALEAKEGTWLHLDDMDLfQVWPLKFRYwpNNNSRMYVFE-NTKDFVSAHGLEVDDFVMVY-KDDETG 224
                     89**********************99*9777778889999996667********9888999999999.*****************999.333777 PP

                     ..EE CS
              B3  91 elvv 94 
                     ++v+
  XP_010100050.1 225 SYVI 228
                     6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-23124233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19130228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.71E-21130229No hitNo description
PROSITE profilePS508639.404132234IPR003340B3 DNA binding domain
SMARTSM010192.0E-11132234IPR003340B3 DNA binding domain
PfamPF023621.7E-12132228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MANQEVIDWE MLMSTEEAVL SDHIISAPLG VGVDVQVQEN IVINNNNHDY DYLINLDDDE  60
DRVVAVDLDR PSEEINNGTL IPSRVGRGRS YSRNARVKSN LVCQPRTPRV PIVAPPSPPP  120
RVINPSMIRF LFKKQLHNSD VSAAGRIVIP KKVAELHLPA LEAKEGTWLH LDDMDLFQVW  180
PLKFRYWPNN NSRMYVFENT KDFVSAHGLE VDDFVMVYKD DETGSYVIRG KKSVVRPVMD  240
IINAAVHNIN STTNLQNANN VIINKPAVNI EYGGNYWPLN YNGDGNNINI NNNLYGNPII  300
VDQFNGGSAL SQPSGFGQVP VDQQFPTLGF DNFPQLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-431282421115B3 domain-containing transcription factor FUS3
6j9b_D2e-431282421115B3 domain-containing transcription factor FUS3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9RJX60.0W9RJX6_9ROSA; B3 domain-containing transcription factor FUS3
STRINGXP_010100050.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98582838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-46B3 family protein