PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YB | ||||||||
Protein Properties | Length: 254aa MW: 28081.9 Da PI: 6.8447 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179.6 | 2.8e-56 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianvsrimkk lP+nakisk+aketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfe+yv plkvyl+kyre+ege XP_010099896.1 32 KEQDRLLPIANVSRIMKKSLPSNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFENYVGPLKVYLNKYREVEGE 126 89********************************************************************************************9 PP NF-YB 97 k 97 k XP_010099896.1 127 K 127 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-53 | 30 | 148 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.09E-41 | 34 | 150 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-27 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-19 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-19 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 1.6E-19 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSKGNYQAT SNTSPIGSPL QGNNICDINS SKEQDRLLPI ANVSRIMKKS LPSNAKISKE 60 AKETVQECVS EFISFITGEA SDKCQREKRK TVNGDDLLWA MTTLGFENYV GPLKVYLNKY 120 REVEGEKNFM SRQEDHHSPT TNTTTSSNHG PHHHDHDYHQ MVNINNNNKG SNSVPLINKV 180 DFQDFNSGGF HSLGGQMNVP KSYEEVSNGM VFGYGSDNYV SGISNYNVNV THESGGDGNA 240 NRVMAAHLHH GIGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-48 | 32 | 122 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-48 | 32 | 122 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099896.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099896.1 | 0.0 | nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | W9RLN5 | 0.0 | W9RLN5_9ROSA; Nuclear transcription factor Y subunit B-3 | ||||
STRING | XP_010099896.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-63 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402991 |