PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010099719.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

SBP

Protein Properties

Length: 1023aa MW: 112865 Da PI: 6.9694

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010099719.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvC++hska+++lv ++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_010099719.1 148 VCQVEDCRADLTNAKDYHRRHKVCDMHSKASKALVGSIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.2E-32	143	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.214	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.94E-38	147	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.73E-6	791	904	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.4E-5	793	904	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.15E-5	793	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MEAKFGGKGR HHKHLCGPVV GGKKSSSFEW DLNDWRWDGD LCTATPLSSL PAPASAPAPN 60 CCSSLSDERE ERDSEKRRRD AVVVGENNGE EEKGLKLGGQ AYPIIAEEGE VKAGKKSKVV 120 GTETAAAAAA IAAATAATTG LNSGRSAVCQ VEDCRADLTN AKDYHRRHKV CDMHSKASKA 180 LVGSIMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPETTVN GGSLNDERGS 240 SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKSLASIAG TVDGRNISAL LQGSQGLVNA 300 GMSVEASKKP LDMISDGLEP CKPYGSTSKV DNPTNLEAPS NFEGQCPRVY VSDMAPTRIS 360 SGAGLMDPLQ SVDSLKAKSI SPDKIVGRVK FNDIDLNNIY DDSQDHVENP GSSQLLVTSE 420 TMTPENPMCI QKGSHKPSPS QPSQNSDSAT TQSPSSSSGE AQSCTDRIVF KLFGKDPSDL 480 PFELRRQILN WLSRSPTDIE SYIRPGCIIL TIYLHLEKST REELCCDLGS ILKRMLDASN 540 DPFWKTGWMY SRVQNYVAFT YNGQLILDTP LPLKSYKSCR ISSIKPVAVS LSDRTQFVVK 600 GFNLFCPSTR LLCALDGKYL LQETCYELMD DADATIEHDE IQCLRFSCSI PSVTGRGFIE 660 IEDHGLSSSY FPFIVAEQEV CSELCMLEGA IELDETGDVG GQGNRVEAKN QAMDFIHEMG 720 WLLHRSHVKF RLGHLDPNSS PFPFGRFRRL MEFSMEHDWC FVVKKLLGIL FEGTVDAGEH 780 PSIEVAILDM GLLHRAVRRN CRPMVELLLK FVPHKARDEQ GSEESQEVDK GSWSFLFKPD 840 VGGPMGLTPL HIAASLDACE SVLDALTDDP GKVGVEAWKS ALDETGLTPN DYACLRGHYS 900 YIHLVQRKTR KGLESGHVVV NIPGSLLDSN TEQKQPDGHK TSKVASLEVG KFQTKTMQQH 960 CRVCQQHKLT YGNRSSLVYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF KPFRWEKLKY 1020 GSS

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MEAKFGGKGR HHKHLCGPVV GGKKSSSFEW DLNDWRWDGD LCTATPLSSL PAPASAPAPN  60
CCSSLSDERE ERDSEKRRRD AVVVGENNGE EEKGLKLGGQ AYPIIAEEGE VKAGKKSKVV  120
GTETAAAAAA IAAATAATTG LNSGRSAVCQ VEDCRADLTN AKDYHRRHKV CDMHSKASKA  180
LVGSIMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPETTVN GGSLNDERGS  240
SYLLISLLRI LSNMHSNSSD QTKDQDLLSH LLKSLASIAG TVDGRNISAL LQGSQGLVNA  300
GMSVEASKKP LDMISDGLEP CKPYGSTSKV DNPTNLEAPS NFEGQCPRVY VSDMAPTRIS  360
SGAGLMDPLQ SVDSLKAKSI SPDKIVGRVK FNDIDLNNIY DDSQDHVENP GSSQLLVTSE  420
TMTPENPMCI QKGSHKPSPS QPSQNSDSAT TQSPSSSSGE AQSCTDRIVF KLFGKDPSDL  480
PFELRRQILN WLSRSPTDIE SYIRPGCIIL TIYLHLEKST REELCCDLGS ILKRMLDASN  540
DPFWKTGWMY SRVQNYVAFT YNGQLILDTP LPLKSYKSCR ISSIKPVAVS LSDRTQFVVK  600
GFNLFCPSTR LLCALDGKYL LQETCYELMD DADATIEHDE IQCLRFSCSI PSVTGRGFIE  660
IEDHGLSSSY FPFIVAEQEV CSELCMLEGA IELDETGDVG GQGNRVEAKN QAMDFIHEMG  720
WLLHRSHVKF RLGHLDPNSS PFPFGRFRRL MEFSMEHDWC FVVKKLLGIL FEGTVDAGEH  780
PSIEVAILDM GLLHRAVRRN CRPMVELLLK FVPHKARDEQ GSEESQEVDK GSWSFLFKPD  840
VGGPMGLTPL HIAASLDACE SVLDALTDDP GKVGVEAWKS ALDETGLTPN DYACLRGHYS  900
YIHLVQRKTR KGLESGHVVV NIPGSLLDSN TEQKQPDGHK TSKVASLEVG KFQTKTMQQH  960
CRVCQQHKLT YGNRSSLVYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF KPFRWEKLKY  1020
GSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	135	222	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010099719.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099719.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	W9RIZ1	0.0	W9RIZ1_9ROSA; Squamosa promoter-binding-like protein 12
STRING	XP_010099719.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Entrez Gene	21407861

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]