PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ARF | ||||||||
Protein Properties | Length: 937aa MW: 104510 Da PI: 7.8932 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 240 | 341 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ XP_010099050.1 240 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 331 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_010099050.1 332 GELRVGVRRA 341 99*****996 PP | |||||||
2 | Auxin_resp | 120.2 | 1.7e-39 | 366 | 448 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++gv+d+dp rW++SkWr+Lk XP_010099050.1 366 AWHAISTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMKFEGEEAPEQRFTGTIIGVEDADPKRWTDSKWRCLK 448 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-42 | 231 | 355 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-40 | 237 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-21 | 238 | 340 | No hit | No description |
Pfam | PF02362 | 1.3E-21 | 240 | 341 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 240 | 342 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-23 | 240 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-37 | 366 | 448 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-10 | 797 | 901 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.11E-11 | 812 | 889 | No hit | No description |
PROSITE profile | PS51745 | 24.228 | 812 | 896 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 937 aa Download sequence Send to blast |
MVMVSTSEIS VKGNSGNPRG GERESFSSSG FADQNDGRKS AKGLSSTLFL RRQTPGEERE 60 RASLPPVSPT RTTVESPRKV CRRLFSSGAG KTIPAGFWSI FRRDFRVTEQ FRLFLSSDFV 120 SVCFVLVDAD DVALYKELWH ACAGPLVTVP RENERVFYFP QGHIEQVEAS TNQVAEQQMP 180 VYDLPSKILC RVMNVELKAE PDTDEVFAQI ILLPEQQQDE NAVEKGSPPP SPPRIQVHSF 240 CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP 300 RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRKQDNVPS SVISSHSMHL 360 GVLATAWHAI STGTMFTVYY KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMKFEGEEAP 420 EQRFTGTIIG VEDADPKRWT DSKWRCLKVR WDETSTIPRP DRVSPWKIEP ALAPPALNPL 480 PVPRSKRPRS NIVPLSPDSS VLTREGSLKV TVDPSLPSAF SRVLQGQEYS TLRGNFAESN 540 ELDAAEKSVM WPPSLDDEKI DVVSASSRRY RSENWVASGR HEPTYTDLLS GFGATVDSSR 600 GIGSPCTDQS VVPVNSMRKQ DQDGRFNLHS SPRSMLPLPS PLSLGLDTNL KGSVQSGTIS 660 YQAQGRYVGF DDYPILHGHR VEHPHGNWFM PPPSSPHLEN LAHSKELISK PVLGQKNEAV 720 KPKEGNCKLF GYSLIRAEPA VSHTSVVDKS TGQRNLVSSQ AQKFEFAQKS EQAGGSKSAD 780 NPVPMNDQEK PLQTSQQHFR EGQGKAQSGS TRSCTKVHKQ GIALGRSVDL TKFNKYDELV 840 AELDRLFEFG GELMAPKKNW LIVYTDDEGD MMLVGDDPWQ EFCCMVRKIF IYTREEVQKM 900 SPGTLNSHGE GNQVSVEVMD AKEKPQTLPL SSIPANC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 133 | 470 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 133 | 470 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 133 | 470 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023134.1 | 0.0 | auxin response factor 2B isoform X1 | ||||
Refseq | XP_024023135.1 | 0.0 | auxin response factor 2B isoform X2 | ||||
Refseq | XP_024023136.1 | 0.0 | auxin response factor 2B isoform X3 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | W9RH45 | 0.0 | W9RH45_9ROSA; Auxin response factor | ||||
STRING | XP_010099050.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21388680 |