PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19561.1 Da PI: 8.3747 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.5 | 1.5e-45 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvhk+FGasnv+k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la XP_010098482.1 18 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHKVFGASNVSKMLQELPLHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLA 112 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_010098482.1 113 LAQAE 117 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.408 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-45 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MKDNNSGSGS RKQGAPSPCA ACKLLRRRCA QDCVFSPYFP ADEPQKFANV HKVFGASNVS 60 KMLQELPLHQ RGDAVSSMVY EANARVRDPV YGCVGAISSL QQQIDVLQAQ LALAQAEVVH 120 LRVRQSAPLS NHGLSPASPS NSGSPSSKFV GSQAKPIFDM DMTVDQSTYG ETCGHAGLIS 180 GFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-50 | 14 | 119 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-50 | 14 | 119 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098482.1 | 1e-134 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 5e-75 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | W9R7L5 | 1e-132 | W9R7L5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098482.1 | 1e-133 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-66 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 21408597 |