PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | FAR1 | ||||||||
Protein Properties | Length: 230aa MW: 26390.2 Da PI: 8.3598 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.2 | 2e-26 | 65 | 153 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ XP_010098449.1 65 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 153 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-24 | 65 | 153 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MPEVMVPPSG LPKFATKWEQ EVDSDEGAGA VESSAVHPLV PYEGDTILEP CEGMEFDSED 60 AAKIFYDEYA RRLGFVMRVM SCRRSERDGR ILARRLGCNK EGYCVSIRGK FGPVRKPRPS 120 TREGCKAMIH VKYDKSGKWV ITKFVKDHNH PLVVSTREAR QTMDEKDKKI QELTVELRNK 180 KRLCSTYQEQ LTAFIKIVEE HSDQLSKKVQ NVVSNLKEIE PIDQDLSQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098449.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098449.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_024022740.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_024022742.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
TrEMBL | W9RFJ0 | 1e-171 | W9RFJ0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098449.1 | 1e-171 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-110 | FAR1 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21395393 |