PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 407aa MW: 46239 Da PI: 4.3046 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.9 | 1.1e-12 | 176 | 254 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + ++++l+ W+ev++k++e ++ r+ +qC+++++ l+k+ykk+k + + +++yf++++ XP_010098044.1 176 WTERETFVLLDAWGQRFIQRGKKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKLNLTS-------KWVYFKKMD 254 *************************************762678*********************999886.......59****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-5 | 175 | 242 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.2E-19 | 175 | 254 | No hit | No description |
PROSITE profile | PS50090 | 6.481 | 176 | 233 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDDTEDDARY PPNPYGVNHQ QGYESSLRQK MPGLGGSYPR PVGSQYDDED EEDDEEDEEL 60 GEEEDGNNNN NNGQSNGYAV VRKDVGDDVD DDDEDENDND DEDEDEDDDN GEQKNYNGRS 120 EGVDMERHLK KRKLKSLVSS YEFAPRIPAP SPSSAAKPSG PSPRQSFGGR NSLTDWTERE 180 TFVLLDAWGQ RFIQRGKKSL RSEEWQEVAE KVSEVSKIDR TDTQCRNRLD TLKKKYKKEK 240 LNLTSKWVYF KKMDLLLSSP QQQPGLSCGL DSGEYVFMNP GVYLNRANGL DEMRDSPANS 300 ESAEGNDDDT DGLPPKKRKS GRDNGDGNEG SSFRLIADSI HKISEIYEKI ESSKRQQMVE 360 LEKMRMDFQR DLEIQRRQIM ERAQAEIAKI RRGVDEEIDV SAENASG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098044.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098044.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
Refseq | XP_024022519.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | W9R635 | 0.0 | W9R635_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098044.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2441 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 8e-56 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21408841 |