PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 26116 Da PI: 4.7228 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 3.9e-40 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf+ ++ p++fa+vhk+FGasnv+kll +lp ++r+da++++ yeA ar+rdP+yG+v++i++lqqq+++l++e+ XP_010096608.1 7 SCGACKFLRRKCSSECIFAPYFCYDEaPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAATTISYEALARMRDPIYGCVAHIFTLQQQIACLQEEI 101 6***********************8879******************************************************************* PP DUF260 95 allkeel 101 + l++++ XP_010096608.1 102 EILGNQI 108 *998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.074 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTGFGSSCGA CKFLRRKCSS ECIFAPYFCY DEAPSHFAAV HKVFGASNVS KLLLHLPVHN 60 RSDAATTISY EALARMRDPI YGCVAHIFTL QQQIACLQEE IEILGNQIAN NLTAGIASCG 120 SSEATNNNNS SNVNETQIFP QNDAMNSQYY QNQQEILLSQ IGNSTENNNN QSGFDGHNMG 180 VHFPPFYGWG EENVPCHTFS DPLRKLFEGT EQEKFGNSPW LDDIPNMGNC IGPIWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096608.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096608.1 | 1e-178 | LOB domain-containing protein 33 | ||||
TrEMBL | W9R256 | 1e-177 | W9R256_9ROSA; Uncharacterized protein | ||||
STRING | XP_010096608.1 | 1e-178 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-58 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Entrez Gene | 21408058 |