PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095636.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 320aa    MW: 35057.6 Da    PI: 9.9376
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095636.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-212671449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+sn qvtfskRr g++KKA+EL++LC+ae a+++fs+  k++ +
  XP_010095636.1 26 KNESNLQVTFSKRRSGLFKKASELCTLCGAEMALVVFSPGRKVFSF 71
                    89*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.8711575IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-291574IPR002100Transcription factor, MADS-box
CDDcd002652.47E-351687No hitNo description
SuperFamilySSF554551.14E-261687IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-181737IPR002100Transcription factor, MADS-box
PfamPF003191.5E-232571IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-183752IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-185273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MENNNNNDNL RRGNRGRQKV EMVKMKNESN LQVTFSKRRS GLFKKASELC TLCGAEMALV  60
VFSPGRKVFS FGHPSVEEVV ERYSNCQRFI PADQMVSAGD VSGVGTGAGN GTLQLIEAHR  120
NANLRELNAQ LAQVMGRLDL ERKRGEEMSK LRKASQAQCW WENPVDQLDM EQLGQLKKSL  180
EELKKVVQHQ ADRILMQASV AVNNASSVIA YTPVPPPPPP LQTPQFYPAV GGSGSGQQGG  240
GNMMVVPHNN NNANTNNMTT NMINMNGGFS TNNNSPVPVV NNHGMMNMAS LPLAPPPPPR  300
QNRHSHGFNN SIGYGRGGYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-141684169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-141684169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-141684169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-141684169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A6e-141684169Myocyte-specific enhancer factor 2A
3kov_B6e-141684169Myocyte-specific enhancer factor 2A
3kov_I6e-141684169Myocyte-specific enhancer factor 2A
3kov_J6e-141684169Myocyte-specific enhancer factor 2A
3mu6_A3e-141684169Myocyte-specific enhancer factor 2A
3mu6_B3e-141684169Myocyte-specific enhancer factor 2A
3mu6_C3e-141684169Myocyte-specific enhancer factor 2A
3mu6_D3e-141684169Myocyte-specific enhancer factor 2A
3p57_A6e-141684169Myocyte-specific enhancer factor 2A
3p57_B6e-141684169Myocyte-specific enhancer factor 2A
3p57_C6e-141684169Myocyte-specific enhancer factor 2A
3p57_D6e-141684169Myocyte-specific enhancer factor 2A
3p57_I6e-141684169Myocyte-specific enhancer factor 2A
3p57_J6e-141684169Myocyte-specific enhancer factor 2A
6bz1_A6e-141684270MEF2 CHIMERA
6bz1_B6e-141684270MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095636.10.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-58AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLW9RA290.0W9RA29_9ROSA; Agamous-like MADS-box protein AGL62
STRINGXP_010095636.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]