PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010095635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24265.9 Da PI: 7.9954 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.7 | 2.7e-22 | 18 | 61 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n+sn qvtfskRr gi+KKA+EL++LC++e+a+i fs+ +k XP_010095635.1 18 KIPNQSNLQVTFSKRRSGIFKKASELCTLCGVEIAIIAFSPANK 61 689**************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-29 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.637 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-25 | 10 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.79E-32 | 10 | 84 | No hit | No description |
PRINTS | PR00404 | 6.3E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-24 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAKKPIISQG RKKIVMAKIP NQSNLQVTFS KRRSGIFKKA SELCTLCGVE IAIIAFSPAN 60 KPFSFGHPSV DSVVDRFLIG QKNSSMKCSI SGNNQMIVHE LNVELTQLLS ELEAEKRKGQ 120 ELEGVKSQCW WESPVDELSL SGLESLKAAM EELKNKVNMT RQEHMIASVQ QISAARFHEF 180 LMMNGGYDHD VFNNKPVDDF TNLREAHNFG FGNEIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010095635.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095635.2 | 1e-149 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-51 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | W9R7M8 | 1e-159 | W9R7M8_9ROSA; Agamous-like MADS-box protein AGL62 | ||||
STRING | XP_010095635.1 | 1e-160 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-53 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Entrez Gene | 21387260 |
Publications ? help Back to Top | |||
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