PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010095561.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 266aa MW: 30043.7 Da PI: 9.3832

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010095561.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	47	61	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ XP_010095561.1 47 SGSCPRGEKCHFQHD 61 59************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.84	35	63	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-6	39	63	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	39	64	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MVDGKEAAKR STDGVSDSQY WRYDVSQKRQ KHGDGDGNKL CFIFVSSGSC PRGEKCHFQH 60 DADAREQSMR GVCLIFSTRE NVKRVQIATS STAYKMKVRD ILTGDVDMKM LQLTGKTIES 120 ELYYDDYKRW SSLSLPPSPY WDRRHSLPRH SPLPLYKRPR RDDGGYDGRS PRGGFGPGDR 180 SDYGSGVIFK ERDGEVRERS CSGREIVQGE TKIVEKERWT VTPQTGVSDV EIKDKKKYNS 240 SLPEDKSTSP VVAIYSALLL ASPRGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010095561.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9R9X0	0.0	W9R9X0_9ROSA; Zinc finger CCCH domain-containing protein 64
STRING	XP_010095561.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7132	19	23

Link Out ? help Back to Top
Entrez Gene	21390681