PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094742.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 299aa    MW: 33774.6 Da    PI: 8.3306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094742.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
   XP_010094742.1 23 RGPWTVEEDSLLIHYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding52.98.5e-1776119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_010094742.1  76 RGNLTPEEQLLILDLHSKWGNR-WSKIAQFLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9271874IPR017930Myb domain
SuperFamilySSF466894.87E-3121117IPR009057Homeodomain-like
SMARTSM007171.6E-162272IPR001005SANT/Myb domain
PfamPF002493.0E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232477IPR009057Homeodomain-like
CDDcd001674.30E-132570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007176.0E-1575123IPR001005SANT/Myb domain
PROSITE profilePS5129420.70675125IPR017930Myb domain
PfamPF002492.6E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2378124IPR009057Homeodomain-like
CDDcd001673.72E-1280119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSTNITKSSN TSSSEDDTNE LRRGPWTVEE DSLLIHYIAR HGEGRWNLLA KRSGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQLLILDL HSKWGNRWSK IAQFLPGRTD NEIKNYWRTR  120
VQKQAKHLKI DIGSAAFQDI IRRFWMPRLI QKIEGSTFSG TAIQNNPTAP TPIHIASQQS  180
HSPTIAENSS SSQKVVSGHG NQNISINMSH ISHFSEYPNS AFPQPMALNN DYNTTFVEGC  240
SYGGDKNDYD MCVFNQTSVS ADGVLQNPVG GCHVAGSNWA ENDISASMWN MDELWQYNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26201254108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094742.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094742.10.0transcription factor MYB62
SwissprotQ9C9G73e-82MYB62_ARATH; Transcription factor MYB62
TrEMBLW9QXC40.0W9QXC4_9ROSA; Transcription factor
STRINGXP_010094742.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.13e-84myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]