PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094332.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 276aa MW: 30512.5 Da PI: 9.1175

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094332.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cgk Fs++ L H++ H XP_010094332.1 30 FECPYCGKDFSSSQALGGHQNAH 52 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.2E-6	24	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.98E-7	26	57	No hit	No description
Pfam	PF13912	1.4E-7	29	54	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	13.048	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MKLFGFSVPC SHKVINGSGN DLDHQNKQRF ECPYCGKDFS SSQALGGHQN AHKAERKLAK 60 TAQTRRSNPP PPDHSPPPPP HHYHNQEAFV VGVPMIISAH HAVIRPSGPS AVHSGGPRCI 120 IRPVARFERV SPWPVSAAAA HPRYAVNVGS SESSNIIHYG PIRARRVSSR HVGDVTGADR 180 VVSGARSAPY ATVMGQGSEG DHDHDHPPHR YGLEEEWQVS WGNWYQRCRL DCFRWCENGM 240 LLVDMWCKSI VRVVFPSVSS VVVVLLLQGS TQIPFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094332.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9R403	0.0	W9R403_9ROSA; Zinc finger protein 6
STRING	XP_010094332.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-11	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21391140