PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HSF | ||||||||
Protein Properties | Length: 398aa MW: 45365.9 Da PI: 4.5456 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.1 | 1.4e-33 | 16 | 108 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k ye++ d++++++isw+++g+ fv++d+++f+ ++Lpk+Fkhsnf+SF+RQLn+YgF+kv++++ w F+ + F +g+k+ll++ XP_010093311.1 16 FLRKCYEMVGDNSTDSIISWNDTGDCFVIWDMTQFSVQLLPKFFKHSNFSSFMRQLNIYGFRKVDTDH---------WIFASDGFIRGQKHLLKN 101 9*****************************************************************99.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ XP_010093311.1 102 ICRRKNT 108 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.4E-51 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.85E-33 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-34 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.9E-29 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-18 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-18 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.8E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MVKSRENGDD GSVAPFLRKC YEMVGDNSTD SIISWNDTGD CFVIWDMTQF SVQLLPKFFK 60 HSNFSSFMRQ LNIYGFRKVD TDHWIFASDG FIRGQKHLLK NICRRKNTQG PDQRKASQQK 120 EHQPDELREK VQNGLENGMW KEVENLKTDK NVLMQELVKL QQHQEISENK LLVLRDRLQG 180 LEKNQQQMLS FLVMAMQSPG FFVQLLQPKE NNWRVAEAGN MLEQGSLDDK TMASDGMIVR 240 YQSPMTETSD PAFTPTSGAE KTPDSGSYPD GMQDFFLNSN NYSDFLKVLM DEKLCSLESH 300 SPLVLPDTDD GSWRQLLLAS RFLENVEETK EDGEETVDSG MEAELTLPGT PLGNSQNFDL 360 FGMESTVSET NLEKAQYMDT LTEQMGLLSS EPKNRHGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-21 | 12 | 105 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-21 | 12 | 105 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-21 | 12 | 105 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093311.1 | 0.0 | heat stress transcription factor A-8 | ||||
TrEMBL | W9R141 | 0.0 | W9R141_9ROSA; Heat stress transcription factor A-8 | ||||
STRING | XP_010093311.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10419 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 1e-98 | heat shock transcription factor A8 |
Link Out ? help Back to Top | |
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Entrez Gene | 21390189 |