PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010092418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | CPP | ||||||||
Protein Properties | Length: 786aa MW: 85251.2 Da PI: 6.8565 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.9 | 6.3e-16 | 491 | 528 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk XP_010092418.1 491 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 528 89**********************************96 PP | |||||||
2 | TCR | 50.2 | 5.2e-16 | 575 | 613 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN XP_010092418.1 575 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 613 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.0E-17 | 489 | 530 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.911 | 490 | 615 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.5E-11 | 492 | 527 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-16 | 575 | 616 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.9E-11 | 577 | 613 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MDTPERNKIG TPASKFEDSP VFNYINSLSP IKPVKSLHVT QTFSSLSFAS LPSVFTSPHV 60 SSHKESRFIR RHSSSDPLKP EISSENGNAA CTSEGVGVDP AQLYNNSAEQ HENCDSGVDI 120 GAVSVDPHNE GSKFVIELPH TLKYDCGSPD DCVSTPCGVE ADFALKLVDP SASLDPHVQE 180 VREKGSSDGE TQYHEMCLSE RKIDGAVCDW ESLISDTADI LIFNSPNGSE AFKGLIQNSL 240 EPVTRYCSSL AVELSGINNE HHMQIVDPVS SEQQNGEVPS SEIRDCSRLK DIGQTCMASD 300 PGETKDNEAE TYVAFSCKSV FSLHRGMRRR CLDFEMAGAR RKNLGDGSSS SSGLSQPDEK 360 ITTNEKQLGP LRPCGDSSRH VLPGIGLHLN ALTTTSKGNK VRKSDNLSSG IHIRLPNYAA 420 SIHSPRAGQE ALDKSETPAS SIIDTNAAEN GVQLLQDASQ APGSLASEDF NQNSPKKKRR 480 KLENAGETEG CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQECFNKPIH EDTVLATRKQ 540 IESRNPLAFA PKVIRGSDSV PEFGDESSKT PASARHKRGC NCKKSNCLKK YCECYQGGVG 600 CSISCRCEGC KNAYGRKDGS SALIGTETEQ DEEETEACEK SLVDKPSQKI DIHNNEEQNP 660 GSAHPMTPLR MSRSLVPLPF SSKGKPPRSS FLTVASSSSG LYSQKHGKPG ILRSQPKEKH 720 MPTIPDDEMP EILRGDGSPT TGIKTASPNS KRISPPHCHF GSPSRRSGRK LILQSIPSFP 780 SLTPQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-18 | 494 | 612 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 7e-18 | 494 | 612 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 474 | 481 | PKKKRRKL |
2 | 475 | 479 | KKKRR |
3 | 475 | 480 | KKKRRK |
4 | 476 | 480 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010092418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092418.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | W9RCX7 | 0.0 | W9RCX7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010092418.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-170 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21392445 |